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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9640063_9642175_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9640063 - 9642175
Intron Length:
2113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGCA
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATCTAAGAACA
Flanking Amino Acid:
CTRRTTSHQKKKRAACKSVN
Intron Amino Acid Position:
1128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.5
35.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.4
0.5
1
71.6
33.2
Minor 5ss
31.2
-2.1
3.5
39
40.6
Minor BPS
42.6
-0.5
1.8
53.22
38

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761