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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9648172_9651256_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9648172 - 9651256
Intron Length:
3085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGTTT
5'SS Class:
major
3'SS Sequence:
TTCCTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTGAAT
Flanking Amino Acid:
PPSEANGKITGYIIYYSTDV
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
69.1
38
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.8
0.47
0.9
69.2
35.8
Minor 5ss
35.5
-1.6
3.7
55.1
49.1
Minor BPS
70.2
0.72
1.4
85.92
33.5

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761