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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9659464_9660289_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9659464 - 9660289
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TTGCACTGAAAA
Flanking Amino Acid:
KQRYYTIENLDPSSHYVITL
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
90.2
0.9
0.6
89.9
18.2
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
50
-0
1.8
64.72
40.7

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761