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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9660485_9663845_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9660485 - 9663845
Intron Length:
3361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTGTTTAACA
Flanking Amino Acid:
SAETFESDLDETRVPEVPSS
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
84.4
0.77
0.9
81
35.4
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
76.2
0.82
1.7
86.93
31.8

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761