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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9678081_9699461_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9678081 - 9699461
Intron Length:
21381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGCACATGACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
TTGCCCTTCATA
Flanking Amino Acid:
AGAQLIILDLDVAIPTLPPT
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
47.8
-0.1
1.2
42.4
41.4
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
62.3
0.38
1.8
72.55
39.9

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761