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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9699583_9700407_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9699583 - 9700407
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTTCACTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCTTCACT
Flanking Amino Acid:
VIPSDYFKIVKEHNLQVLGL
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.3
0.59
0.8
73.3
31.3
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
78.4
0.98
1.7
93.01
35.4

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041144
9629902 - 9759568
129667
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761