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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9731167_9737275_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9731167 - 9737275
Intron Length:
6109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TGTCCATCAATT
Flanking Amino Acid:
TRNEEELTTEGSERFLFLAG
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
75.5
0.57
1
71.5
38.3
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
55.7
0.26
1.8
76.39
39.7

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761
ENSAPLT00000041144
9629902 - 9759568
129667