About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9741392_9759250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9741392 - 9759250
Intron Length:
17859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTCACTTTACT
Flanking Amino Acid:
VSRTAKLTVAGLPRFTSQPE
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
85.7
0.8
0.7
80.7
30.1
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
60.1
0.4
1.9
80.2
40.7

Associated Gene:

Gene:
NEO1
Ensembl Gene ID:
ENSAPLG00000015725
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040772
9629902 - 9759662
129761
ENSAPLT00000016455
9629902 - 9759662
129761
ENSAPLT00000016454
9629902 - 9759662
129761
ENSAPLT00000046122
9629902 - 9759662
129761
ENSAPLT00000041144
9629902 - 9759568
129667