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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9762086_9810372_R

Intron Information:

Intron Rank:
141153
Intron Class:
major
Intron Phase:
Intron Coordinates:
9762086 - 9810372
Intron Length:
48287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCCGG
5'SS Class:
major
3'SS Sequence:
CCTTATCTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GTTTCTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.1
49.1
46.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
70.3
0.46
1
67.5
37.8
Minor 5ss
43.4
-0.7
2.8
56.8
47.3
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023269
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033010
9761070 - 9810516
49447