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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9884045_9903611_R

Intron Information:

Intron Rank:
130609
Intron Class:
major
Intron Phase:
Intron Coordinates:
9884045 - 9903611
Intron Length:
19567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGAATCAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
43.5
-0.4
1.9
60.62
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017507
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047266
9883702 - 9904797
21096