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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9885515_9886273_R

Intron Information:

Intron Rank:
145745
Intron Class:
major
Intron Phase:
Intron Coordinates:
9885515 - 9886273
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AGCTGCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
66.9
0.61
1.8
79.07
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025808
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040404
9884472 - 9887117
2646