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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9930312_9932497_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9930312 - 9932497
Intron Length:
2186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTCAG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTGCAT
U12 Branch Point Sequence:
TTTCCCTGCAGT
Flanking Amino Acid:
PARGWARVAVGVNACVDVVL
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
51
0.03
1.5
63.1
44.4
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
31.7
-2.1
3.1
32
42.5
Minor BPS
50
0.08
2.2
78.42
43.5

Associated Gene:

Gene:
ADPGK
Ensembl Gene ID:
ENSAPLG00000015943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016635
9930097 - 9936732
6636