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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9934627_9935129_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9934627 - 9935129
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGTGC
5'SS Class:
major
3'SS Sequence:
TGCTTTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CTCTTCTGAGTT
Flanking Amino Acid:
EFHLILEYQAGEEWGQVKAP
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.36
1.3
55.9
44.3
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
69.1
0.43
0.9
61.7
40
Minor 5ss
41.6
-0.9
3.4
59.3
45.4
Minor BPS
50.6
0.1
1.7
67.82
43.7

Associated Gene:

Gene:
ADPGK
Ensembl Gene ID:
ENSAPLG00000015943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016635
9930097 - 9936732
6636