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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9935614_9936180_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9935614 - 9936180
Intron Length:
567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTGTTCCTGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGTCTCTGAAGG
Flanking Amino Acid:
QDFMSNIVHQQVFPLVNSIG
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
69.8
0.49
1
61
37.5
Major PPT
73.5
0.53
1
74.3
36.5
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
49.5
-0.1
1.8
58.31
43

Associated Gene:

Gene:
ADPGK
Ensembl Gene ID:
ENSAPLG00000015943
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016635
9930097 - 9936732
6636