Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9952253_9952390_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9952253 - 9952390

Intron Length:

138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

TTCCTTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAT

U12 Branch Point Sequence:

TCCTTTTTGAAG

Flanking Amino Acid:

CFFGKKKYVAAISCLKRANY

Intron Amino Acid Position:

250

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

79.3

34.5

Major BPS

76.2

0.65

1.1

65.7

43.2

Major PPT

79.8

0.67

82.2

26.9

Minor 5ss

42.5

-0.8

2.8

60.5

37.7

Minor BPS

51.3

-0.1

1.5

54.1

41.7

Associated Gene:

Gene:

BBS4

Ensembl Gene ID:

ENSAPLG00000015992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016695

9946197 - 9966023

19827

ENSAPLT00000016694

9946197 - 9965838

19642