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Intron Name: Anas_platyrhynchos_platyrhynchos_11_9960742_9960780_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9960742 - 9960780

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGCTGACA

5'SS Class:

weak_major

3'SS Sequence:

CGATCGCTGTGAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCTCAA

U12 Branch Point Sequence:

ACAACCTCAAGC

Flanking Amino Acid:

FQTCSILNPRMVFLLFLLGK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.1

55.1

37.5

Major BPS

64.3

0.36

65.6

31.9

Major PPT

45.6

-0.2

1.7

50.2

43.7

Minor 5ss

27.8

-2.5

3.2

31.5

36.3

Minor BPS

47.8

-0.1

1.9

54.85

42.8

Associated Gene:

Gene:

BBS4

Ensembl Gene ID:

ENSAPLG00000015992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016695

9946197 - 9966023

19827

ENSAPLT00000016694

9946197 - 9965838

19642