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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9960859_9961650_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9960859 - 9961650
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
AATGGACTAATT
Flanking Amino Acid:
GRCEYAVYVQALIFRLEGKI
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
42.2
-0.5
2.2
61.46
42.3

Associated Gene:

Gene:
BBS4
Ensembl Gene ID:
ENSAPLG00000015992
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016694
9946197 - 9965838
19642