Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9961715_9965778_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9961715 - 9965778

Intron Length:

4064

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

TTACATTTACCC

Flanking Amino Acid:

YVRRDYDECKAVIKEQLQES

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

73.9

0.59

30.2

Major PPT

82.7

0.74

0.8

80.3

31.7

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

51.5

0.03

1.8

65.7

39.6

Associated Gene:

Gene:

BBS4

Ensembl Gene ID:

ENSAPLG00000015992

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032232

9960035 - 9969170

9136

ENSAPLT00000016694

9946197 - 9965838

19642