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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_996501_1033348_R

Intron Information:

Intron Rank:
143445
Intron Class:
major
Intron Phase:
Intron Coordinates:
996501 - 1033348
Intron Length:
36848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTC
5'SS Class:
major
3'SS Sequence:
ATTTCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
74.3
37.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.2
0.77
0.8
78.1
34.6
Minor 5ss
39.7
-1.2
3
52.8
44.4
Minor BPS
63.8
0.51
1.7
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024481
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044037
904302 - 1033428
129127