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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9985522_9988095_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9985522 - 9988095
Intron Length:
2574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
CCCTTTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCCCCTTTGCT
Flanking Amino Acid:
DIKQKVQDKYRYCESRRRVL
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
72
0.55
1
71.8
31.4
Major PPT
77.6
0.62
0.8
72
32.6
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
42.1
-0.5
3.6
69.38
47.2

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521