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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9988209_9989036_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9988209 - 9989036
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCCATCTAAAAA
Flanking Amino Acid:
KKNNQSIIFENNQADLENAT
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.3
34.5
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
89.7
0.89
0.7
84.7
30.1
Minor 5ss
28.3
-2.5
3.5
37.3
47.4
Minor BPS
47.9
-0.1
1.8
56.31
43

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521