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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9989298_9990604_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9989298 - 9990604
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GGAATTAACACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCCCTAATG
Flanking Amino Acid:
DAKAARDAQERSRAALQRYL
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
55.1
0.12
1.1
47.3
43.8
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
73.4
0.6
1.7
80.27
35.6

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521