About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9998952_9999667_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9998952 - 9999667
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTCTTTCACT
Flanking Amino Acid:
PVRCKCGRQFCFNCGENWHD
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84.8
0.78
0.7
81.7
29
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
74
0.84
1.7
90.07
34.1

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521