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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_9999775_10000761_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9999775 - 10000761
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
QHLITNSFVECNRLLKWCPA
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
85
0.79
0.7
80.9
30.8
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521