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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10011809_10014710_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10011809 - 10014710
Intron Length:
2902

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TCTGCTTTACCT
Flanking Amino Acid:
NPEIAQTILQTFISRFRRIM
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
93.9
19.1
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
82.9
0.74
0.7
81.2
30.7
Minor 5ss
25.9
-2.8
3.8
41.5
45.1
Minor BPS
63.1
0.49
1.7
78.9
44

Associated Gene:

Gene:
GINS3
Ensembl Gene ID:
ENSAPLG00000026073
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026614
10010093 - 10015304
5212