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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10014945_10015124_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10014945 - 10015124
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
CCCACTTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
AGGSGDSIPEGSKLEIPMWL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
72.2
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.2
0.34
0.9
59.8
35.3
Minor 5ss
29.1
-2.4
2.8
35.6
41
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
GINS3
Ensembl Gene ID:
ENSAPLG00000026073
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026614
10010093 - 10015304
5212