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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10048317_10050029_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10048317 - 10050029
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACCGGCA
5'SS Class:
weak_major
3'SS Sequence:
TTGATTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
CCTTCCTTGATT
Flanking Amino Acid:
AAAGSPAGGATHGRAKSKMR
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
49.1
41.8
Major BPS
70
0.5
1
59.3
39.1
Major PPT
78.7
0.65
1
73
42
Minor 5ss
34.5
-1.8
3.7
47.2
48.3
Minor BPS
76.6
0.92
1.2
82.57
39.6

Associated Gene:

Gene:
CCDC113
Ensembl Gene ID:
ENSAPLG00000016196
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016893
10044994 - 10050194
5201