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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10049623_10050029_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10049623 - 10050029
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACCGGCA
5'SS Class:
weak_major
3'SS Sequence:
CGTCATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCACCCAGACCC
Flanking Amino Acid:
PQLRARLQEERHAIALLRAE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
49.1
41.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
79
0.65
0.9
72.5
37.3
Minor 5ss
34.5
-1.8
3.7
47.2
48.3
Minor BPS
44.1
-0.4
1.9
54.88
42.5

Associated Gene:

Gene:
CCDC113
Ensembl Gene ID:
ENSAPLG00000016196
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032973
10044994 - 10050667
5674