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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10090904_10092334_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10090904 - 10092334
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AGATCCTAAAGC
Flanking Amino Acid:
LVLEIEGTNVSTTYITCPAD
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
69
0.43
0.8
66.5
29.9
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
52
0.04
2
62.44
42.7

Associated Gene:

Gene:
CFAP20
Ensembl Gene ID:
ENSAPLG00000001222
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023245
10084803 - 10093161
8359
ENSAPLT00000022444
10084803 - 10095100
10298
ENSAPLT00000001280
10084803 - 10094309
9507