Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10092447_10092819_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10092447 - 10092819

Intron Length:

373

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

TTCGTTGCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAC

U12 Branch Point Sequence:

CCAGGCTCAGCA

Flanking Amino Acid:

LKKYFTFEVQVLDDKNVRRR

Intron Amino Acid Position:

232

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.5

42.7

Major BPS

62.6

0.31

1.2

66.7

39.9

Major PPT

73.2

0.52

0.9

65.1

41.2

Minor 5ss

26.2

-2.7

2.9

30.6

42.9

Minor BPS

39.4

-0.8

2.1

43.79

44.6

Associated Gene:

Gene:

CFAP20

Ensembl Gene ID:

ENSAPLG00000001222

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023245

10084803 - 10093161

8359

ENSAPLT00000022444

10084803 - 10095100

10298

ENSAPLT00000001280

10084803 - 10094309

9507