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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10093009_10094189_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10093009 - 10094189
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGACTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
TNYIETLRVQIHANCRIRRV
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
77.2
0.61
0.9
73.7
35.8
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
CFAP20
Ensembl Gene ID:
ENSAPLG00000001222
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022444
10084803 - 10095100
10298
ENSAPLT00000001280
10084803 - 10094309
9507