Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10126591_10126854_F

Intron Information:

Intron Rank:

137543

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10126591 - 10126854

Intron Length:

264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCCT

5'SS Class:

strong_major

3'SS Sequence:

TAAACCTGAGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

TCTTTGTGAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

71.4

40.3

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

57.1

0.16

1.1

51.9

Minor 5ss

35.1

-1.7

3.1

48.4

47.3

Minor BPS

50.3

0.01

2.1

67.18

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024056

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043788

10126384 - 10130129

3746