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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10127006_10127128_F

Intron Information:

Intron Rank:
137537
Intron Class:
major
Intron Phase:
Intron Coordinates:
10127006 - 10127128
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
CAAACTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
77.1
0.61
1
73.8
36.9
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
47
-0.2
1.7
53.41
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024056
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043788
10126384 - 10130129
3746
ENSAPLT00000032844
10126384 - 10132437
6054
ENSAPLT00000023267
10126855 - 10130129
3275