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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10140041_10140313_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10140041 - 10140313
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTCG
5'SS Class:
major
3'SS Sequence:
TGGCCTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTAAAATAATC
Flanking Amino Acid:
VTSDDESPSASPSKPAPTAA
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.5
36.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
70.7
0.47
0.9
61.6
40
Minor 5ss
37.5
-1.4
2.8
46.3
42.1
Minor BPS
47.5
-0.2
2
66.86
38

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059