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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10141493_10142388_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
10141493 - 10142388
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAGCGTGC
5'SS Class:
major
3'SS Sequence:
TTCCTAACCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
AATTCCTAACCA
Flanking Amino Acid:
FVRGGRHNSECDKKAMKENY
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61
0.26
1.3
52.2
41.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
50.3
0.01
1.7
58.4
36.1
Minor 5ss
31
-2.2
4.4
46.4
44.5
Minor BPS
57.8
0.24
2
70.9
41.2

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059