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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10142639_10142986_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10142639 - 10142986
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCACAC
U12 Branch Point Sequence:
GCACACTGGAGC
Flanking Amino Acid:
PLLRFPRCLKYMAFFEFNNR
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
47.5
-0.1
1
52.4
34.3
Major PPT
81
0.7
0.7
73
31.9
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
40.4
-0.7
1.8
42.66
37.7

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059