Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10143052_10143279_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10143052 - 10143279

Intron Length:

228

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

ATTTCTTTTATA

Flanking Amino Acid:

EAILSKAYIYRVIRTTAYLL

Intron Amino Acid Position:

322

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

72.2

39.5

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

96.2

1.04

0.5

92.4

17.6

Minor 5ss

34.3

-1.8

2.9

44.2

Minor BPS

68.2

0.57

1.5

77.18

34.1

Associated Gene:

Gene:

CNGB1

Ensembl Gene ID:

ENSAPLG00000002819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002863

10135862 - 10148920

13059