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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10144607_10144890_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10144607 - 10144890
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
GGCAAATAAACT
Flanking Amino Acid:
VFAFSVMIGQMRDVVGAATA
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
62
0.3
1
62.3
30.4
Major PPT
82.3
0.73
0.8
81
31
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.6
-0.4
2
56.79
44.7

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059