About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10145051_10145434_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10145051 - 10145434
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAA
U12 Branch Point Sequence:
AGCGCTGAAAAC
Flanking Amino Acid:
EYTWQSQGMLDESELLVQLP
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
48.3
-0.1
1.2
54.7
37.8
Major PPT
80.8
0.69
0.7
73.2
31.7
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
37.3
-0.9
2.1
41.73
39.1

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059