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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10145533_10145615_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10145533 - 10145615
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTGG
5'SS Class:
weak_major
3'SS Sequence:
TGTTTTGGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
ACGGGCTGACCG
Flanking Amino Acid:
NIVSKVALFQGCDRQMIFDM
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
47.7
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
73
0.52
1
68.8
41.9
Minor 5ss
47.7
-0.2
2.9
65.1
46.1
Minor BPS
38.7
-1
2.1
37.7
45

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059