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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10145700_10146096_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10145700 - 10146096
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGAGC
5'SS Class:
major
3'SS Sequence:
GTCTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTCAGGGTAACT
Flanking Amino Acid:
YLPNDYVCKKGEIGREMYII
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
58.9
46
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
78.4
0.64
0.9
72.4
37.7
Minor 5ss
37.1
-1.5
3.3
52.2
44.6
Minor BPS
41.5
-0.5
2.8
67.89
48.7

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059