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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10146216_10146513_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10146216 - 10146513
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCGAA
5'SS Class:
major
3'SS Sequence:
GTGTTTCATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCACCATTCACA
Flanking Amino Acid:
LKAGSVFGEISLLAAGGGNR
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.5
38.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.6
0.6
1
74.3
40.5
Minor 5ss
31.1
-2.2
3.2
38.1
46.8
Minor BPS
46.8
-0.2
2
55.93
42.4

Associated Gene:

Gene:
CNGB1
Ensembl Gene ID:
ENSAPLG00000002819
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002863
10135862 - 10148920
13059