Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10166825_10167918_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10166825 - 10167918

Intron Length:

1094

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGGGA

5'SS Class:

major

3'SS Sequence:

GCTCCCACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCCCAA

U12 Branch Point Sequence:

CTGCTCCCAACC

Flanking Amino Acid:

AACTMNLEKAGGRFCSGKRA

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

60.5

40.3

Major BPS

50.7

0.02

1.2

62.1

35.8

Major PPT

70.5

0.46

0.9

62.7

Minor 5ss

23.6

-3

3.3

43.5

Minor BPS

46.1

-0.3

1.9

56.4

41.9

Associated Gene:

Gene:

KIFC3

Ensembl Gene ID:

ENSAPLG00000003400

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047805

10161332 - 10177647

16316

ENSAPLT00000003479

10154421 - 10177647

23227