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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10168116_10171582_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10168116 - 10171582
Intron Length:
3467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
CTCCCCGTCACA
Flanking Amino Acid:
LAVSVQLQGQGGTDLEKHRD
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
50
0
1.2
54.6
40.8
Major PPT
67.9
0.4
0.8
62.7
26.8
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
46
-0.3
2.4
60.03
46

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027764
10162182 - 10178335
16154