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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10172047_10172320_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10172047 - 10172320
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCGCAG
U12 Branch Point Sequence:
CTTGGCGCAGCG
Flanking Amino Acid:
SLKSQPQQIKYIIKTVEVES
Intron Amino Acid Position:
473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
35.4
-0.9
1.6
36.8
44.4
Major PPT
76.2
0.59
0.9
73.9
36.8
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
34.5
-1.3
2.5
42.75
48.4

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034238
10162182 - 10178335
16154
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154