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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10172495_10172657_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10172495 - 10172657
Intron Length:
163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGTA
5'SS Class:
strong_major
3'SS Sequence:
ACCCCCCTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCAAC
U12 Branch Point Sequence:
ATCACCCTACCA
Flanking Amino Acid:
QKTAAQLRAQIAMYESELER
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
73.3
37.8
Major BPS
54.2
0.1
1.2
62.7
32.2
Major PPT
67.6
0.4
0.8
57.5
32.5
Minor 5ss
31.7
-2.1
3.8
46.3
49
Minor BPS
48.7
-0.1
2
63.28
42.7

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034238
10162182 - 10178335
16154
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154