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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10172806_10172883_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10172806 - 10172883
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
CCATCCATCATC
Flanking Amino Acid:
EMKAVHENLAGVRTNLLTLQ
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
69.4
0.44
1
61.5
40.2
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
47
-0.2
2
55.55
43.1

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154
ENSAPLT00000034238
10162182 - 10178335
16154