About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10173015_10173111_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10173015 - 10173111
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GTCCTCTCACCC
Flanking Amino Acid:
QETLRSARAEIGQAIEEVNN
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
72.7
0.56
1
75
30.1
Major PPT
72.8
0.51
0.9
65.4
35.2
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
46.9
-0.2
1.8
56.33
42

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154
ENSAPLT00000034238
10162182 - 10178335
16154