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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10175114_10175614_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10175114 - 10175614
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTGGCCTGACCG
Flanking Amino Acid:
RVQSVEDINKVFEFGHVKRV
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
62.8
0.29
1
60.1
35.8
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
46.8
-0.3
2
51.53
48.6

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034238
10162182 - 10178335
16154
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154