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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_10175745_10175827_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10175745 - 10175827
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
ACTGCCAAAAGC
Flanking Amino Acid:
LDRSTGLRTTGKLNLVDLAG
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.5
33.9
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
74.3
0.55
0.9
65.1
41.2
Minor 5ss
31.5
-2.1
3
42.7
44.3
Minor BPS
42.6
-0.5
2.2
52.97
44.7

Associated Gene:

Gene:
KIFC3
Ensembl Gene ID:
ENSAPLG00000003400
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034238
10162182 - 10178335
16154
ENSAPLT00000027764
10162182 - 10178335
16154
ENSAPLT00000003479
10154421 - 10177647
23227
ENSAPLT00000047805
10161332 - 10177647
16316
ENSAPLT00000035552
10162182 - 10178335
16154